About the Team
TEMPO is the iGEM 2026 team from the University of Science and Technology of China. We are a
group of students with diverse academic backgrounds and complementary skills, united by a shared
curiosity about how biological systems can be designed to keep time. Many of us joined iGEM as
first-year students, while others came aboard as second-year students already carrying prior
experience. As the project progressed, the first-years stepped into their second year, and the
second-years moved into their third—not only advancing in academic standing, but also growing in
skills, responsibilities, and our collective understanding of synthetic biology. Time changed
our grades. More importantly, it changed what we were capable of doing. Our team is built
primarily around biology, with members bringing biological knowledge, experimental design
expertise, and molecular biology skills to the bench. Alongside them, students from chemistry
contribute a molecular perspective and chemical understanding that enriches how we approach our
system. Students from automation bring an engineering mindset to the team. They help us think
about biological networks not only as biochemical pathways, but as systems that can be designed,
controlled, and programmed—a perspective that connects naturally to TEMPO’s programmable
oscillator and binary counter. Within TEMPO, we organize our work across five groups:
Experimental Team, Modeling Team, Human Practices Team, Visual Design Team, and Website Team.
Although we work in different groups, our work is never isolated. We are not five separate
groups working under one name. We are one team, speaking the languages of biology, chemistry,
engineering, modeling, design, and society, working together to build something none of us could
build alone.
Project Description
TEMPO is a modular synthetic timing system composed of three functional layers: an oscillator, a
binary counter, and an effector, corresponding to a biological clock, memory, and actuator. The
oscillator generates periodic molecular pulses that define discrete units of biological time.
These pulses are converted into integrate expression signals and transmitted to the downstream
counter. Instead of measuring absolute hours directly, TEMPO counts repeated oscillator cycles,
allowing elapsed time to be encoded into stable DNA states. At the core of the system is an
expandable integrate-RDF-based binary counter. Each input pulse triggers reversible
site-specific DNA recombination, switching an individual bit between two genetic states. By
cascading multiple switches, the system can progress through binary states such as 000, 001,
010, 011, and 100, enabling scalable pulse counting and long-term genetic memory. Once a
predefined state is reached, a state-specific promoter activates an effector module, enabling
functions such as timed protein expression or programmed cell elimination. Mathematical modeling
serves as a central bridge between these modules. We characterized oscillator period, amplitude,
and recombine output, and directly coupled the simulated oscillator waveform to the binary
counter to test whether realistic pulses could reliably drive DNA-state transitions. For the
single-bit counter, parameter screening was used to optimize repressor-promoter strength, assess
the need for degradation tags, and guide experimental construction. We further compared two
multi-bit carry strategies—a feed-forward pulse-based cascade and a free-recombine-mediated
cascade—to evaluate scalability. Finally, global sensitivity analysis identified the parameters
that most strongly influence oscillation period, switching efficiency, and overall robustness.
Modeling also revealed a potential limitation in expression termination, motivating an
additional control module for more precise timing. Together, TEMPO transforms time from a
passive biological variable into an engineeringable input, providing a quantitative and modular
framework for autonomous gene expression, biocontainment, biosensing, and programmable
therapeutic systems.
Cultural Connection
TEMPO’s design also echoes a long tradition of understanding time through cycles rather than
absolute numerical measurements. In traditional Chinese culture, time was historically organized
through recurring natural rhythms. The twelve Shichen divided a day according to the periodic
movement of the Sun, while traditional calendars combined lunar cycles, seasonal changes, and
the Twenty-Four Solar Terms to coordinate agriculture and everyday life. Instead of treating
time as an abstract number, these systems interpreted time through repeated observable events:
sunrise and sunset, seasonal transitions, plant growth, temperature changes, and celestial
motion. TEMPO follows a surprisingly similar logic at the cellular scale. Rather than giving a
cell an external clock or asking it to directly measure “seven hours” or “twenty-four hours,”
TEMPO creates an internal biological rhythm. Each oscillator cycle becomes a discrete unit of
time, analogous to the repeated natural phenomena used in traditional timekeeping. The binary
counter then records how many cycles have occurred, converting transient rhythms into persistent
genetic memory. When a predefined number of cycles has passed, the cell performs a programmed
action. This creates a conceptual correspondence: natural cycle → time unit → accumulated record
→ scheduled activity becomes oscillation → molecular pulse → genetic count → biological action.
This cultural connection is therefore not a direct reproduction of an ancient technology, but a
methodological inspiration. Both traditional Chinese timekeeping and TEMPO understand time
through periodic processes and use accumulated cycles to determine when an event should occur.
From agricultural calendars that guided sowing and harvesting to synthetic circuits that
determine when a cell expresses a protein or terminates itself, the underlying idea remains
similar: time becomes meaningful when rhythm can be observed, remembered, and translated into
action. TEMPO therefore offers a modern synthetic-biology interpretation of an ancient human
idea—using cycles to give structure to time.